| 1 | Clinical Microbiology Reviews | 28.9 | 99th | Q1 | SCIE | – | No |
| 2 | Nature Microbiology | 28.8 | 98th | Q1 | SCIE | – | No |
| 3 | Trends in Microbiology | 25.9 | 98th | Q1 | SCIE | – | No |
| 4 | The Lancet Microbe | 24.8 | 97th | Q1 | SCIE | – | Yes |
| 5 | Microbiome | 23 | 96th | Q1 | SCIE | – | Yes |
| 6 | Gut Microbes | 19.5 | 96th | Q1 | SCIE | – | Yes |
| 7 | Food Packaging and Shelf Life | 19.4 | 95th | Q1 | SCIE | – | No |
| 8 | Clinical Infectious Diseases | 17.1 | 94th | Q1 | SCIE | – | No |
| 9 | Clinical Microbiology and Infection | 17.1 | 94th | Q1 | SCIE | – | No |
| 10 | Current Opinion in Microbiology | 14.9 | 93th | Q1 | SCIE | – | No |
| 11 | Eurosurveillance | 13.6 | 92th | Q1 | SCIE | – | Yes |
| 12 | British Journal of Biomedical Science | 12.7 | 92th | Q1 | SCIE | – | Yes |
| 13 | Antibiotics | 10.2 | 91th | Q1 | SCIE | – | Yes |
| 14 | Journal of Infection | 10.1 | 90th | Q1 | SCIE | – | Yes |
| 15 | Frontiers in Microbiology | 9.9 | 90th | Q1 | SCIE | – | Yes |
| 16 | Frontiers in Cellular and Infection Microbiology | 9.6 | 89th | Q1 | SCIE | – | Yes |
| 17 | Emerging Infectious Diseases | 9.5 | 88th | Q1 | SCIE | – | Yes |
| 18 | Infectious Diseases and Therapy | 9.3 | 88th | Q1 | SCIE | – | Yes |
| 19 | International Journal of Infectious Diseases | 9.1 | 87th | Q1 | SCIE | – | Yes |
| 20 | Expert Review of Anti-Infective Therapy | 9.1 | 86th | Q1 | SCIE | – | No |
| 21 | Progress in Microbes and Molecular Biology | 8.8 | 86th | Q1 | – | – | Yes |
| 22 | Journal of Fungi | 8.7 | 85th | Q1 | SCIE | – | Yes |
| 23 | Antimicrobial Resistance and Infection Control | 8.4 | 84th | Q1 | SCIE | – | Yes |
| 24 | International Journal of Antimicrobial Agents | 8.3 | 84th | Q1 | SCIE | – | No |
| 25 | Microorganisms | 8.2 | 83th | Q1 | SCIE | – | Yes |
| 26 | Current Research in Microbial Sciences | 8.2 | 82th | Q1 | ESCI | – | Yes |
| 27 | Journal of Oral Microbiology | 8.2 | 81th | Q1 | SCIE | – | Yes |
| 28 | Journal of Clinical Microbiology | 8.1 | 81th | Q1 | SCIE | – | Yes |
| 29 | Journal of Clinical Laboratory Analysis | 8.1 | 80th | Q1 | SCIE | – | Yes |
| 30 | Infectious Disease Clinics of North America | 8 | 79th | Q1 | SCIE | – | No |
| 31 | Journal of Microbiology, Immunology and Infection | 7.8 | 79th | Q1 | SCIE | – | Yes |
| 32 | Annals of Clinical Microbiology and Antimicrobials | 7.6 | 78th | Q1 | SCIE | – | Yes |
| 33 | AIMS Microbiology | 7.6 | 77th | Q1 | ESCI | – | Yes |
| 34 | Microbiology Spectrum | 7.5 | 77th | Q1 | SCIE | – | Yes |
| 35 | Infection | 7.4 | 76th | Q1 | SCIE | – | No |
| 36 | Virulence | 7.2 | 75th | Q1 | SCIE | – | Yes |
| 37 | Current Opinion in Infectious Diseases | 7 | 75th | Q1 | SCIE | – | No |
| 38 | Molecular Oral Microbiology | 7 | 74th | Q2 | SCIE | – | No |
| 39 | Animal Microbiome | 6.9 | 73th | Q2 | ESCI | – | Yes |
| 40 | Pathogens | 6.7 | 73th | Q2 | SCIE | – | Yes |
| 41 | Current Topics in Microbiology and Immunology | 6.7 | 72th | Q2 | – | – | No |
| 42 | Journal of Antimicrobial Chemotherapy | 6.6 | 71th | Q2 | SCIE | – | No |
| 43 | BMC Microbiology | 6.5 | 71th | Q2 | SCIE | – | Yes |
| 44 | Pathogens and Disease | 6.3 | 70th | Q2 | – | – | No |
| 45 | Infectious Medicine | 6.2 | 69th | Q2 | ESCI | – | Yes |
| 46 | Microbial Risk Analysis | 6.1 | 69th | Q2 | SCIE | – | No |
| 47 | Journal of Global Antimicrobial Resistance | 6.1 | 68th | Q2 | SCIE | – | Yes |
| 48 | Medical Microbiology and Immunology | 5.9 | 67th | Q2 | SCIE | – | No |
| 49 | Journal of Hospital Infection | 5.8 | 67th | Q2 | SCIE | – | No |
| 50 | Infection Control and Hospital Epidemiology | 5.8 | 66th | Q2 | SCIE | – | No |
| 51 | Biosafety and Health | 5.6 | 65th | Q2 | ESCI | – | Yes |
| 52 | Beneficial Microbes | 5.5 | 64th | Q2 | SCIE | – | No |
| 53 | hLife | 5.5 | 64th | Q2 | – | – | Yes |
| 54 | Infection, Genetics and Evolution | 5.5 | 63th | Q2 | SCIE | – | Yes |
| 55 | Current Clinical Microbiology Reports | 5.4 | 62th | Q2 | ESCI | – | No |
| 56 | JAC-Antimicrobial Resistance | 5.3 | 62th | Q2 | ESCI | – | Yes |
| 57 | Canadian Journal of Infectious Diseases and Medical Microbiology | 5.3 | 61th | Q2 | SCIE | – | Yes |
| 58 | International Journal of Microbiology | 5.3 | 60th | Q2 | ESCI | – | Yes |
| 59 | Infezioni in Medicina | 5.1 | 60th | Q2 | – | – | No |
| 60 | Microbial Drug Resistance | 5 | 59th | Q2 | SCIE | – | No |
| 61 | European Journal of Clinical Microbiology and Infectious Diseases | 5 | 58th | Q2 | SCIE | – | No |
| 62 | Frontiers in Antibiotics | 5 | 58th | Q2 | ESCI | – | Yes |
| 63 | Current Issues in Molecular Biology | 5 | 57th | Q2 | SCIE | – | Yes |
| 64 | Journal of Water and Health | 4.8 | 56th | Q2 | SCIE | – | Yes |
| 65 | European Journal of Microbiology and Immunology | 4.6 | 56th | Q2 | ESCI | – | No |
| 66 | Revista Espanola de Quimioterapia | 4.5 | 55th | Q2 | SCIE | – | Yes |
| 67 | Infectious Diseases | 4.4 | 54th | Q2 | SCIE | – | No |
| 68 | International Microbiology | 4.4 | 54th | Q2 | SCIE | – | No |
| 69 | Tuberculosis | 4.3 | 53th | Q2 | SCIE | – | No |
| 70 | Interdisciplinary Perspectives on Infectious Diseases | 4.3 | 52th | Q2 | – | – | Yes |
| 71 | Pathogens and Immunity | 4.3 | 52th | Q2 | – | – | Yes |
| 72 | International Journal of Medical Microbiology | 4.2 | 51th | Q2 | SCIE | – | Yes |
| 73 | Future Microbiology | 4.2 | 50th | Q2 | SCIE | – | No |
| 74 | Sage Open Pathology | 4.1 | 50th | Q2 | ESCI | – | No |
| 75 | APMIS | 4.1 | 49th | Q3 | SCIE | – | No |
| 76 | Journal of Medical Microbiology | 3.8 | 48th | Q3 | SCIE | – | No |
| 77 | Frontiers in Tropical Diseases | 3.8 | 47th | Q3 | – | – | Yes |
| 78 | Journal of Microbiological Methods | 3.8 | 47th | Q3 | SCIE | – | No |
| 79 | Revista Argentina de Microbiologia | 3.7 | 46th | Q3 | SCIE | – | Yes |
| 80 | Journal of Clinical Tuberculosis and Other Mycobacterial Diseases | 3.7 | 45th | Q3 | ESCI | – | Yes |
| 81 | Pediatric Infectious Disease Journal | 3.7 | 45th | Q3 | SCIE | – | No |
| 82 | Microbiology Research | 3.5 | 44th | Q3 | ESCI | – | Yes |
| 83 | Revista da Sociedade Brasileira de Medicina Tropical | 3.5 | 43th | Q3 | SCIE | – | Yes |
| 84 | Polish Journal of Microbiology | 3.4 | 43th | Q3 | SCIE | – | Yes |
| 85 | PHAGE: Therapy, Applications, and Research | 3.4 | 42th | Q3 | ESCI | – | No |
| 86 | Brazilian Journal of Infectious Diseases | 3.2 | 41th | Q3 | SCIE | – | Yes |
| 87 | Frontiers in Microbiomes | 3.2 | 41th | Q3 | ESCI | – | Yes |
| 88 | Journal of Infection and Chemotherapy | 3.1 | 40th | Q3 | SCIE | – | No |
| 89 | Acta Microbiologica et Immunologica Hungarica | 3.1 | 39th | Q3 | SCIE | – | No |
| 90 | Clinical Epidemiology and Global Health | 3.1 | 39th | Q3 | ESCI | – | Yes |
| 91 | Sexually Transmitted Diseases | 2.9 | 38th | Q3 | SCIE | – | No |
| 92 | GERMS | 2.9 | 37th | Q3 | ESCI | – | No |
| 93 | Infectious Disorders - Drug Targets | 2.9 | 37th | Q3 | – | – | No |
| 94 | Surgical Infections | 2.9 | 36th | Q3 | SCIE | – | No |
| 95 | Diagnostic Microbiology and Infectious Disease | 2.8 | 35th | Q3 | SCIE | – | No |
| 96 | Japanese Journal of Infectious Diseases | 2.8 | 35th | Q3 | SCIE | – | No |
| 97 | International Journal of Mycobacteriology | 2.7 | 34th | Q3 | ESCI | – | Yes |
| 98 | Microorganisms for Sustainability | 2.7 | 34th | Q3 | – | – | No |
| 99 | Memorias do Instituto Oswaldo Cruz | 2.7 | 32th | Q3 | SCIE | – | Yes |
| 100 | Methods in Microbiology | 2.6 | 32th | Q3 | – | – | No |